PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11078_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 323aa    MW: 36533.4 Da    PI: 6.7806
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11078_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12185210126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF+H+
  Neem_11078_f_1 185 YQPDICKDYKETGYCGYGDSCKFMHD 210
                     67789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-9182215IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7184211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878184212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12185215IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10185210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.6E-13251303IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.17E-12261304No hitNo description
PfamPF139201.3E-8261303No hitNo description
PROSITE profilePS5008910.35262300IPR001841Zinc finger, RING-type
CDDcd001623.58E-7262303No hitNo description
SMARTSM001845.8E-4262299IPR001841Zinc finger, RING-type
PROSITE patternPS005180277286IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAESGSGEAQ QSEQICNFFR KPTRNKNIRK RTINEDEDED STESSVLQNQ RKASKPDSKL  60
YFSTGSSESA AAADSSTETE KPIFQFESSK EIQVQHDNRA TATLETETEF SRDSRALREK  120
VLKRSEEALK GKSSVDEKLY KGMHGYVDHK AGFRREHTVS SEKAGGAHGP LRASAHIRVT  180
ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQL EKEWEEAEKA RKRNLALGGG  240
DPDEGGGDQS DEDDDDSLPF ACFICRKPFV DPVVTKCKHY FCEHCALKHH AKNKKCFVCN  300
QPTLGIFNAA HEIRKKMAEE DRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2csy_A2e-202583171473Zinc finger protein 183-like 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476759.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_006439792.10.0hypothetical protein CICLE_v10021165mg
SwissprotQ8GX841e-170C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A067G2P30.0A0A067G2P3_CITSI; Uncharacterized protein
TrEMBLV4TI410.0V4TI41_9R
STRINGVIT_15s0046g01030.t011e-178(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-144C3H family protein